{
  "_id": "6a20f288cd65a98ecbd1c4ff",
  "Package": "spexvb",
  "Type": "Package",
  "Title": "Parameter Expanded Variational Bayes for High-Dimensional Linear\nRegression",
  "Version": "0.1.0.9001",
  "Authors@R": "c(person('Peter', 'Olejua', email = 'polejua@email.sc.edu', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-2478-0908')), person('Alexander', 'McLain', email = 'mclaina@mailbox.sc.edu', role = 'aut'))",
  "Description": "Implements a parameter expanded variational Bayes\nalgorithm for linear regression models with high-dimensional\nvariable selection. The methodology utilizes spike-and-slab\npriors to perform simultaneous estimation and selection.\nDetails can be found in Olejua et al. (2024)\n<doi:10.21203/rs.3.rs-7208847/v1>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "yes",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://peterolejua.r-universe.dev",
  "Date/Publication": "2026-06-03 23:59:37 UTC",
  "RemoteUrl": "https://github.com/peterolejua/spexvb",
  "RemoteRef": "HEAD",
  "RemoteSha": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
  "Packaged": {
    "Date": "2026-06-04 03:28:52 UTC",
    "User": "root"
  },
  "Author": "Peter Olejua [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-2478-0908>),\nAlexander McLain [aut]",
  "Maintainer": "Peter Olejua <polejua@email.sc.edu>",
  "MD5sum": "2340808ecc07495306cb88558ee67d92",
  "_user": "peterolejua",
  "_type": "src",
  "_file": "spexvb_0.1.0.9001.tar.gz",
  "_fileid": "7e0815f44986fc4bded3584cb6c969d06b853fac1fa92c14e1aa4437af1b3d1d",
  "_filesize": 226538,
  "_sha256": "7e0815f44986fc4bded3584cb6c969d06b853fac1fa92c14e1aa4437af1b3d1d",
  "_created": "2026-06-04T03:28:52.000Z",
  "_published": "2026-06-04T03:35:36.501Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79443683875,
      "time": 195,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7402366824"
    },
    {
      "job": 79443683874,
      "time": 181,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7402363018"
    },
    {
      "job": 79443683869,
      "time": 226,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7402373294"
    },
    {
      "job": 79443683872,
      "time": 249,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7402377180"
    },
    {
      "job": 79443683881,
      "time": 129,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7402351666"
    },
    {
      "job": 79443683855,
      "time": 349,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7402397876"
    },
    {
      "job": 79443683846,
      "time": 118,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7402349563"
    },
    {
      "job": 79443683851,
      "time": 262,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7402379955"
    },
    {
      "job": 79443225946,
      "time": 248,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7402324520"
    },
    {
      "job": 79443683841,
      "time": 151,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7402356797"
    },
    {
      "job": 79443683832,
      "time": 176,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7402362043"
    },
    {
      "job": 79443683871,
      "time": 176,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7402362277"
    },
    {
      "job": 79443683906,
      "time": 234,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7402374064"
    }
  ],
  "_buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/peterolejua/spexvb",
  "_commit": {
    "id": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
    "author": "peterolejua <peterolejua@gmail.com>",
    "committer": "peterolejua <peterolejua@gmail.com>",
    "message": "Expose slab posterior SD (sigma); respect known tau_e\n\nspexvb() now returns sigma (slab posterior SD per coordinate) so the marginal\nposterior SD can be formed downstream. get.initials() no longer overwrites a\nuser-supplied tau_e. Algorithm unchanged; version 0.1.0.9001.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n",
    "time": 1780531177
  },
  "_maintainer": {
    "name": "Peter Olejua",
    "email": "polejua@email.sc.edu",
    "login": "peterolejua",
    "orcid": "0000-0002-2478-0908",
    "description": "Biostatistics",
    "uuid": 7348041
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "glmnet",
      "role": "Imports"
    },
    {
      "package": "caret",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "doParallel",
      "role": "Suggests"
    }
  ],
  "_owner": "peterolejua",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-26",
      "n": 1
    },
    {
      "week": "2025-31",
      "n": 1
    },
    {
      "week": "2025-33",
      "n": 2
    },
    {
      "week": "2026-04",
      "n": 3
    },
    {
      "week": "2026-07",
      "n": 4
    },
    {
      "week": "2026-08",
      "n": 3
    },
    {
      "week": "2026-09",
      "n": 2
    },
    {
      "week": "2026-23",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2026-02-20"
    },
    {
      "name": "v0.1.0.9000",
      "date": "2026-02-24"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "peterolejua",
      "count": 19,
      "uuid": 7348041
    }
  ],
  "_userbio": {
    "uuid": 7348041,
    "type": "user",
    "name": "Peter Olejua",
    "description": "Biostatistics"
  },
  "_downloads": {
    "count": 106,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spexvb"
  },
  "_devurl": "https://github.com/peterolejua/spexvb",
  "_searchresults": 3,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/spexvb.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/peterolejua/spexvb",
  "_realowner": "peterolejua",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-02-17"
    }
  ],
  "_exports": [
    "cv.spexvb",
    "cv.spexvb.fit",
    "get.initials",
    "get.initials.logistic",
    "hspvb",
    "spexvb",
    "spexvb.logistic"
  ],
  "_help": [
    {
      "page": "cv.spexvb",
      "title": "Cross-validation for Sparse Parameter Expanded Variational Bayes (spexvb)",
      "topics": [
        "cv.spexvb"
      ]
    },
    {
      "page": "cv.spexvb.fit",
      "title": "Cross-validation and Final Model Fitting for SPEXVB",
      "topics": [
        "cv.spexvb.fit"
      ]
    },
    {
      "page": "get.initials",
      "title": "Get initial values for spexvb",
      "topics": [
        "get.initials"
      ]
    },
    {
      "page": "get.initials.logistic",
      "title": "Get initial values for spexvb",
      "topics": [
        "get.initials.logistic"
      ]
    },
    {
      "page": "hspvb",
      "title": "Hierarchical Spike-and-Slab Variational Bayes (HSPVB) for High-Dimensional Linear Regression",
      "topics": [
        "hspvb"
      ]
    },
    {
      "page": "spexvb",
      "title": "Parameter Expanded Variational Bayes for Well-Calibrated High-Dimensional Linear Regression with Spike-and-Slab Priors",
      "topics": [
        "spexvb"
      ]
    },
    {
      "page": "spexvb.logistic",
      "title": "Parameter Expanded Variational Bayes for Sparse Logistic Regression",
      "topics": [
        "spexvb.logistic"
      ]
    }
  ],
  "_readme": "https://github.com/peterolejua/spexvb/raw/HEAD/README.md",
  "_rundeps": [
    "caret",
    "class",
    "cli",
    "clock",
    "codetools",
    "cpp11",
    "data.table",
    "diagram",
    "digest",
    "dplyr",
    "e1071",
    "farver",
    "foreach",
    "future",
    "future.apply",
    "generics",
    "ggplot2",
    "glmnet",
    "globals",
    "glue",
    "gower",
    "gtable",
    "hardhat",
    "ipred",
    "isoband",
    "iterators",
    "KernSmooth",
    "labeling",
    "lattice",
    "lava",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "ModelMetrics",
    "nlme",
    "nnet",
    "numDeriv",
    "parallelly",
    "pillar",
    "pkgconfig",
    "plyr",
    "pROC",
    "prodlim",
    "progressr",
    "proxy",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "recipes",
    "reshape2",
    "rlang",
    "rpart",
    "S7",
    "scales",
    "shape",
    "sparsevctrs",
    "SQUAREM",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "spexvb-tutorial.Rmd",
      "filename": "spexvb-tutorial.html",
      "title": "spexvb-tutorial",
      "engine": "knitr::rmarkdown",
      "headings": [
        "spexvb",
        "Installation",
        "Example"
      ],
      "created": "2026-02-10 07:06:27",
      "modified": "2026-02-20 08:09:55",
      "commits": 2
    }
  ],
  "_score": 4.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "spexvb",
  "_universes": [
    "peterolejua"
  ],
  "_previous": "0.1.0.9000",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:31:41.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "a274034041f9aa6a524dfc754ad089f28a24536b04f5101948ed7199317eade5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:31:23.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "26fc307db8fe81429031fdeab3dd2cff73f997fd125b2c152d508cc5665145ad",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:32:05.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "f1ab609e2d367e0eeea7cd8b4a597003218911505b38f9e6aea5c5f880187486",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:32:15.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "4883af283b3a73ce6a7e0249533e265ad0a657e3c97f1215f175559ca2fa75ad",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:30:48.000Z",
      "arch": "aarch64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "c8af98340ac8b76287be64029bdd38f6178b8ea5d4c50a2a9c6025d7e8f563dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:32:45.000Z",
      "arch": "x86_64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "e3f82e0c0eb4cd7cce4a80a3d02796b11012d70ad50f3cc1938f00faa8eff321",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:30:39.000Z",
      "arch": "aarch64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "65a88dbf942406a8ab6fccd448ff4bdfd812e6d51c91bd7775bf1e3d5ccf7008",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:32:06.000Z",
      "arch": "x86_64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "1672fdcbab688a45744587ff6b7ebaf2ace4e9b65a6018ea9b4345b8aa471993",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:31:41.000Z",
      "arch": "emscripten",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "df0d024e2a733a05b4e252b87a4bf6cb01eac0c36617e281a3cc93901e073f71",
      "status": "success",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:30:37.000Z",
      "arch": "x86_64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "4c800afd40dd6c1982623f21b0f17aaca2ed06b426268a74ff28cf12c183afa0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:30:38.000Z",
      "arch": "x86_64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "8fd61ce63138bc2344b369394a85245b3e555759fc284d5ebdaa8ef4306ab42e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0.9001",
      "date": "2026-06-04T03:31:02.000Z",
      "arch": "x86_64",
      "commit": "5e8cc8efe36e8509bed5a1e6295613c42ac6a30f",
      "fileid": "5bca82af1880b80caae3a83e28c4a4f39e7dc299b20c9ae840a760de9a97f1a0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/peterolejua/actions/runs/26928442717"
    }
  ]
}